Manifold Learning

Relevant Papers

  • PHATE: A Dimensionality Reduction Method for Visualizing Trajectory Structures in High-Dimensional Biological Data. With Kevin R. Moon, David van Dijk, Zheng Wang, William Chen, Ronald R. Coifman, Natalia B. Ivanova, Guy Wolf and Smita Krishnaswamy. 2017. pdf, bioRxiv.
  • Time Coupled Diffusion Maps. With Nicholas Marshall. Submitted, 2016. pdfarXiv.
  • A Diffusion-based Condensation Process for Multiscale Analysis of Single Cell Data. With Tobias Welp, Guy Wolf and Smita Krishnaswamy. In ICML Workshop Computational Biology, New York, June 24, 2016. 5 pages. pdfICML WCB.
  • Diffusion maps for changing data. With Ronald R. Coifman. Applied and Computational Harmonic Analysis, volume 36, issue 1, pages 79-107, January 2014. pdfarXivScienceDirectSoftware.
  • Bi-stochastic kernels via asymmetric affinity functions. With Ronald R. Coifman. Applied and Computational Harmonic Analysis, volume 35, issue 1, pages 177-180, July 2013. pdfarXivScienceDirect.
  • Frame based kernel methods for automatic classification in hyperspectral data. With John J. Benedetto, Wojciech Czaja and Justin C. Flake. In Proceedings of the IEEE 2009 International Geoscience and Remote Sensing Symposium, volume 4, pages 697-700, Cape Town, South Africa, July 12-17, 2009. pdfIEEE Xplore.